原著論文
・Error-suppression mechanism of PCR by blocker strands
H. Aoyanagi, S. Pigolotti, S. Ono, *S. Toyabe, Biophys J., 122, 1334-1341 (2023), DOI: 10.1016/j.bpj.2023.02.028

・State transitions of a confined actomyosin system controlled through contractility and polymerization rate
R. Sakamoto, M. Miyazaki, and *Y. T. Maeda, Phys. Rev. Research, 5, 013208 (2023), DOI: 10.1103/PhysRevResearch.5.013208

・Optimal Control of the F1-ATPase Molecular Motor
D. Gupta, S. J. Large, S. Toyabe, and *D. A. Sivak, J. Phys. Chem. Lett., 13, 11844–11849 (2022), DOI: 10.1021/acs.jpclett.2c03033

・Morphological growth dynamics, mechanical stability, and active microtubule mechanics underlying spindle self-organization
T. Fukuyama, L. Yan, M. Tanaka, M. Yamaoka, K. Saito, S. C. Ti, C. C. Liao, K. C. Hsia, *Y. T. Maeda and *Y. Shimamoto, Proc. Natl. Acad. Sci. USA, 119, e2209053119 (2022), DOI: 10.1073/pnas.2209053119

・Geometric trade-off between contractile force and viscous drag determines the actomyosin-based motility of a cell-sized droplet
R. Sakamoto, Z. Izri, Y. Shimamoto, M. Miyazaki and *Y. T. Maeda, Proc. Natl. Acad. Sci. USA, 119, e2121147119 (2022), DOI: 10.1073/pnas.2121147119

・Collective motion of epithelial cells along a wrinkled 3D-buckled hydrogel
K. Shigeta, T. Fukuyama, R. Takahashi, K. Beppu, A. Tanaka and *Y. T. Maeda, RSC Adv., 12, 20174-20181 (2022), DOI: 10.1039/D2RA01768G

・Negative autoregulation controls size scaling in confined gene expression reactions
*Y. T. Maeda, Sci. Rep., 12, 10516 (2022), DOI: 10.1038/s41598-022-14719-4

・Exploring order in active turbulence: Geometric rule and pairing order transition in confined bacterial vortices
K. Beppu and *Y. T. Maeda, BPPB, 19, e190020 (2022), DOI: 10.2142/biophysico.bppb-v19.0020

・Protein Needles Designed to Self-Assemble through Needle Tip Engineering
K. Kikuchi, T. Fukuyama, T. Uchihashi, T. Furuta, Y. T. Maeda, *T. Ueno, Small, 18, 2106401 (2022), DOI: 10.1002/smll.202106401

・Controlling collective motion of kinesin-driven microtubules via patterning of topographic landscapes
S. Araki, K. Beppu, A. M. R. Kabir, *A. Kakugo, *Y. T. Maeda, Nano Letters, 21, 10478-10485 (2021), DOI: 10.1021/acs.nanolett.1c03952

・Edge Current and Pairing Order Transition in Chiral Bacterial Vortices
K. Beppu, Z. Izri, T. Sato, Y. Yamanishi, Y. Sumino, Y. T. Maeda, Proc. Natl. Acad. Sci. USA, 118, e2107461118 (2021), DOI: 10.1073/pnas.2107461118

・Phase Separation and Protein Partitioning in Compartmentalized Cell-Free Expression Reactions
S. Kato, D. Garenne, V. Noireaux, and Y. T. Maeda, Biomacromolecules, 22, 3451–3459 (2021), DOI: 10.1021/acs.biomac.1c00546

・Cooperative stator assembly of bacterial flagellar motor mediated by rotation
KI. Ito, S. Nakamura, S. Toyabe, Nat. Commun., 12, 3218 (2021), DOI: 10.1038/s41467-021-23516-y.

・Optimal rectification without forward-current suppression by biological molecular motor.
Y. Nakayama , S. Toyabe, Phys. Rev. Lett., 126, 208101 (2021), DOI: 10.1103/PhysRevLett.126.208101

・Experimental characterization of autonomous heat engine based on minimal dynamical-system model
S. Toyabe, *Y. Izumida, Phys. Rev. Res E, 2, 033146 (2020), DOI: 10.1103/PhysRevResearch.2.033146

・Harnessing random low Reynolds number flow for net migration
Takeru Morita, Toshiro Omori, Yohei Nakayama, Shoichi Toyabe, and *Takuji Ishikawa, Phys. Rev. E, 101, 063101 (2020), DOI: 10.1103/PhysRevE.101.063101

・Tight chemomechanical coupling of the F1 motor relies on structural stability
Mana Tanaka, Tomohiro Kawakami, Tomoaki Okaniwa, Yohei Nakayama, Shoichi Toyabe, Hiroshi Ueno, and *Eiro Muneyuki, Biophys. J., 119 48-54 (2020), DOI: 10.1016/j.bpj.2020.04.039

・Tug-of-war between actomyosin-driven antagonistic forces determines the positioning symmetry in cell-sized confinement
R. Sakamoto, M. Tanabe, T. Hiraiwa, K. Suzuki, S-I. Ishiwata, Y.T. Maeda and M. Miyazaki, Nat. Commun., 11, 3063 (2020), DOI: 10.1038/s41467-020-16677-9

・Randomness and optimality in enhanced DNA ligation with crowding effects
T. Y. Shiraki, K. Kamei and *Y. T. Maeda, Phys. Rev. Research, 2, 013360 (2020), DOI:10.1103/PhysRevResearch.2.013360

・Gene Expression in on-Chip Membrane-Bound Artificial Cells
Z. Izri, D. Garenne, V. Noireaux, Y. T. Maeda, ACS Synth. Biol.,8(8),267-278(2019),1705-1712 (2019), DOI: 10.1021/acssynbio.9b00247

・Evaluation of the Duty Ratio of the Bacterial Flagellar Motor by Dynamic Load Control.
K. Sato, S. Nakamura, S. Kudo, *S. Toyabe, Biophys. J., 116,1952-1959 (2019), DOI: 10.1016/j.bpj.2019.04.004

・Mechanically Distinct Microtubule Arrays Determine the Length and Force Response of the Meiotic Spindle
J. Takagi, R. Sakamoto, G. Shiratsuchi, Y. T. Maeda, *Y. Shimamoto
Developmental Cell, 49, 267-278(2019), DOI: 10.1016/j.devcel.2019.03.014

・Cooperative ligation breaks sequence symmetry and stabilizes early molecular replication
S. Toyabe, *D. Braun, Phys. Rev. X, 9, 011056 (2019), DOI: 10.1103/PhysRevX.9.011056

書籍/総説・解説
・“鋳型複製系における種の起源”
   鳥谷部 祥一, BRAUN Dieter, 生物物理 , 60, 295-299 (2020)

・“構成的アプローチで探る「発動する人工細胞」の設計原理”
   坂本遼太, 前多裕介, 化学と工業 , 73, 463-465 (2020)

・Optothermal diffusiophoresis of soft biological matters: From physical principle to molecular manipulation
T. Fukuyama, *Y. T. Maeda, Biophys. Rev. , 12, 309-315 (2020), DOI: 10.1007/s12551-020-00692-7x

・Efficiencies of molecular motors: a comprehensible overview
*C. B. Li and *S. Toyabe, Biophys. Rev. , 12, 419-423 (2020), DOI: 10.1007/s12551-020-00672-x

・Session 2SDA—Nonequilibrium energetics of biological molecular machines
*S. Toyabe, C. B. Li, K. Kinbara, Biophys. Rev. , 12, 273-274 (2020), DOI: 10.1007/s12551-020-00634-3

・“遊泳バクテリアで探るアクティブマターの秩序と制御”
   *前多裕介, 別府航早, 生物物理 , 60, 13-18 (2020), DOI: 10.2142/biophys.60.013

・“Geometric Effect for Biological Reactors and Biological Fluids”
   Kazusa Beppu, Ziane Izri, Yusuke T. Maeda*, Ryota Sakamoto,
   Bioengineering , 5, 110 (2018), DOI: 10.3390/bioengineering5040110

・“生体分子モーター ―進化が生んだ超高性能ナノマシン―”
   鳥谷部祥一, 精密工学会誌 , 11, 905-908 (2018), DOI: 10.2493/jjspe.84.905

・Kinetic ratchet mechanism of ATP synthase circumvents rectification trade-off for inhibiting futile ATP consumption
Y. Nakayama, S. Toyabe, arXiv. , 2008, 07106 (2020)

・Edge Current and Pairing Order Transition in Chiral Bacterial Vortex
K. Beppu, Z. Izri, T. Sato, Y. Yamanishi, Y. Sumino, Y. T. Maeda, arXiv. , 2002, 01247 (2020)