研究成果 - C01-1
【原著論文】      【書籍/総説・解説】
原著論文
・Antiparallel dimer structure of CELSR cadherin in solution revealed by high-speed-atomic force microscopy
*S. Nishiguchi, *R. S. Kasai, *T. Uchihashi,
Proc. Natl. Acad. Sci. U.S.A.,, 120, e2302047120 (2023), DOI: 10.1073/pnas.2302047120
・A methodology for creating mutants of G-protein coupled receptors stabilized in active state by combining statistical thermodynamics and evolutionary molecular engineering
T. Yamamoto, S. Yasuda, R. S. Kasai, R. Nakano, S. Hikiri, K. Sugaya, T. Hayashi, S. Ogasawara, M. Shiroishi, T. K. Fujiwara, * M. Kinoshita, *T. Murata,
Protein Sci., 31, e4425 (2022), DOI: 10.1002/pro.4425
・Direct Observation of Stepping Rotation of V-ATPase Reveals Rigid Component in Coupling between Vo and V1 Motors
A. Otomo, T. Iida, Y. Okuni, H. Ueno, T. Murata, *R. Iino,
Proc Natl Acad Sci USA, 119,e2210204119 (2022),DOI: 10.1073/pnas.2210204119
・パターン化人工膜への膜タンパク質の再構成
R. Nagai, A. Sugimachi, Y. Tanimoto, K. G. N. Suzuki, F. Hayashi, *R. S. Kasai, *K. Morigaki,
電気学会論文誌C., 141, 1340-1343 (2021), DOI: 10.1541/ieejeiss.141.1340
・Functional Reconstitution of Dopamine D2 Receptor into a Supported Model Membrane in a Nanometric Confinement
R. Nagai, A. Sugimachi, Y. Tanimoto, K. G. N. Suzuki, F. Hayashi, D. Weikert, P. Gmeiner, *R. S. Kasai, *K. Morigaki,Adv Biol. (Weinh) , e2100636 (2021), 8550–8564 (2021), DOI: 10.1002/adbi.202100636
・Positive charge introduction on the surface of thermostabilized PET hydrolase facilitates PET binding and degradation
*A. Nakamura, N. Kobayashi, N. Koga, *R. Iino, ACS Catal , 14, 8550–8564 (2021), DOI: 10.1021/acscatal.1c01204
・Label-free monitoring of crystalline chitin hydrolysis by chitinase based on Raman spectroscopy
J. Ando, H. Kawagoe, A. Nakamura, R. Iino, *K. Fujita, Analyst , 1, 4087-4094 (2021), DOI: 10.1039/D1AN00581B
・Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases
*A. Nakamura, D. Ishiwata, A. Visootsat, T. Uchiyama, K. Mizutani, S. Kaneko, T. Murata, K. Igarashi, *R. Iino, J Biol Chem. , 295, 14606-14617 (2020), DOI:10.1074/jbc.RA120.014792 OA
・High-speed single-molecule imaging reveals signal transduction by induced transbilayer raft phases
I. Koyama-Honda, T. K. Fujiwara, R. S. Kasai, K. G.N. Suzuki, E. Kajikawa, H. Tsuboi, T. A. Tsunoyama, *A. Kusumi, J. Cell Biol. , 219, e202006125. (2020), DOI:10.1083/jcb.202006125
・Combined Approach to Engineer a Highly Active Mutant of Processive Chitinase Hydrolyzing Crystalline Chitin
A. Visootsat, A. Nakamura, T.W. Wang, and *R. Iino, ACS Omega , 5, 26807–26816 (2020), DOI:10.1021/acsomega.0c03911
・Synergetic roles of Formyl Peptide Receptor 1 oligomerization in ligand-induced signal transduction
T. Nishiguchi, H. Yoshimura, R. S. Kasai, T. K. Fujiwara, *T. Ozawa, ACS Chem. Biol. , 15, 2577-2587 (2020), DOI:10.1021/acschembio.0c00631
・Single Cell Array Enclosed with a Photodegradable Hydrogel in Microwells for Image-Based Cell Classification and Selective Photorelease of Cells
S. Yamaguchi, R. Takagi, T. Hosogane, Y. Ohashi, Y. Sakai, S. Sakakihara, R. Iino, K. V. Tabata, H. Noji, and A. Okamoto, ACS Appl. Bio Mater. , 3, 5887–5895 (2020), DOI:10.1021/acsabm.0c00583
・Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motors:Application to Processive Chitinase
*K. Okazaki, A. Nakamura, R. Iino, J. Phys. Chem. , 124, 6475–6487 (2020), DOI:10.1021/acs.jpcb.0c02698
・Crystalline chitin hydrolase is a burnt-bridge Brownian moto
A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai , J. Ando, R. Iino, Biophysics and Physicobiology,17, 51-58 (2020), DOI:10.2142/biophysico.BSJ-2020004
・Small stepping motion of processive dynein revealed by load-free high-speed single-particle tracking
J. Ando, T. Shima, R. Kanazawa, R. Shimo-Kon, A. Nakamura, M. Yamamoto, T. Kon, *R. Iino, Sci. Rep. , 10 ,1080(2020), DOI:10.1038/s41598-020-58070-y
・Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens
A. Visootsat, A. Nakamura, P. Vignon, H. Watanabe, T. Uchihashi, *R. Iino, J. Biol. Chem., 295, 1915-1925 (2020), DOI:10.1021/acsphotonics.9b00953
・Multicolor High-Speed Tracking of Single Biomolecules with Silver, Gold, and Silver–Gold Alloy Nanoparticles
*J. Ando, A. Nakamura, M. Yamamoto, C. Song, K. Murata, *R. Iino, ACS Photonics , 6, 2870-2883(2019), DOI:10.1021/acsphotonics.9b00953
・Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase
T. Iida, Y. Minagawa, H. Ueno, F. Kawai, T. Murata, *R. Iino, J. Biol. Chem. , 294 ,17017-17030 (2019), DOI:10.1074/jbc.RA119.008947
・Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array
*Y. Zhang, Y. Minagawa, H. Kizoe, K. Miyazaki, R. Iino, H. Ueno, K. Tabata, Y. Shimane, *H. Noji, Sci. Adv.,5, eaav8185 (2019), DOI: 10.1126/sciadv.aav8185
・High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies
T. Umakoshi, S. Fukuda, R. Iino, T. Uchihashi, *T. Ando, Biochimica et Biophysica Acta (BBA) - General Subjects 1864(2019), DOI: 10.1016/j.bbagen.2019.03.011
・Single-nanoparticle tracking with angstrom localization precision and microsecond time resolution
J. Ando, A. Nakamura, A. Visootsat, M. Yamamoto, C. Song, K. Murata, *R. Iino, Biophys. J., 115,2413-2427 (2018), DOI:10.1016/j.bpj.2018.11.016
・Simultaneous Observation of Kinesin-Driven Microtubule Motility and Binding of Adenosine Triphosphate Using Linear Zero-Mode Waveguides
K. Fujimoto, Y. Morita, R. Iino, M. Tomishige, H. Shintaku, H. Kotera, *R. Yokokawa, ACS Nano , 12,11975-11985(2018),DOI:10.1021/acsnano.8b03803
・Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopy
J. Tsunoda, C. Song, F. L. Imai, J. Takagi, H. Ueno, T. Murata, R. Iino, *K. Murata, Sci. Rep., 8, 15632 (2018), DOI: 10.1038/s41598-018-33977-9
・Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin
*A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai, *R. Iino, Nat. Commun., 9, 3814(2018), DOI:10.1038/s41467-018-06362-3
・Plasmid-Based One-Pot Saturation Mutagenesis and Robot-Based Automated Screening for Protein Engineering
F. Kawai, A. Nakamura, A. Visootsat, *R. Iino, ACS Omega, 3, 7715-7726 (2018), DOI: 10.1021/acsomega.8b00663
・Antiparallel dimer structure of CELSR cadherin in solution revealed by high-speed-atomic force microscopy
*S. Nishiguchi, *R. S. Kasai, *T. Uchihashi,
Proc. Natl. Acad. Sci. U.S.A.,, 120, e2302047120 (2023), DOI: 10.1073/pnas.2302047120
・A methodology for creating mutants of G-protein coupled receptors stabilized in active state by combining statistical thermodynamics and evolutionary molecular engineering
T. Yamamoto, S. Yasuda, R. S. Kasai, R. Nakano, S. Hikiri, K. Sugaya, T. Hayashi, S. Ogasawara, M. Shiroishi, T. K. Fujiwara, * M. Kinoshita, *T. Murata,
Protein Sci., 31, e4425 (2022), DOI: 10.1002/pro.4425
・Direct Observation of Stepping Rotation of V-ATPase Reveals Rigid Component in Coupling between Vo and V1 Motors
A. Otomo, T. Iida, Y. Okuni, H. Ueno, T. Murata, *R. Iino,
Proc Natl Acad Sci USA, 119,e2210204119 (2022),DOI: 10.1073/pnas.2210204119
・パターン化人工膜への膜タンパク質の再構成
R. Nagai, A. Sugimachi, Y. Tanimoto, K. G. N. Suzuki, F. Hayashi, *R. S. Kasai, *K. Morigaki,
電気学会論文誌C., 141, 1340-1343 (2021), DOI: 10.1541/ieejeiss.141.1340
・Functional Reconstitution of Dopamine D2 Receptor into a Supported Model Membrane in a Nanometric Confinement
R. Nagai, A. Sugimachi, Y. Tanimoto, K. G. N. Suzuki, F. Hayashi, D. Weikert, P. Gmeiner, *R. S. Kasai, *K. Morigaki,Adv Biol. (Weinh) , e2100636 (2021), 8550–8564 (2021), DOI: 10.1002/adbi.202100636
・Positive charge introduction on the surface of thermostabilized PET hydrolase facilitates PET binding and degradation
*A. Nakamura, N. Kobayashi, N. Koga, *R. Iino, ACS Catal , 14, 8550–8564 (2021), DOI: 10.1021/acscatal.1c01204
・Label-free monitoring of crystalline chitin hydrolysis by chitinase based on Raman spectroscopy
J. Ando, H. Kawagoe, A. Nakamura, R. Iino, *K. Fujita, Analyst , 1, 4087-4094 (2021), DOI: 10.1039/D1AN00581B
・Domain architecture divergence leads to functional divergence in binding and catalytic domains of bacterial and fungal cellobiohydrolases
*A. Nakamura, D. Ishiwata, A. Visootsat, T. Uchiyama, K. Mizutani, S. Kaneko, T. Murata, K. Igarashi, *R. Iino, J Biol Chem. , 295, 14606-14617 (2020), DOI:10.1074/jbc.RA120.014792 OA
・High-speed single-molecule imaging reveals signal transduction by induced transbilayer raft phases
I. Koyama-Honda, T. K. Fujiwara, R. S. Kasai, K. G.N. Suzuki, E. Kajikawa, H. Tsuboi, T. A. Tsunoyama, *A. Kusumi, J. Cell Biol. , 219, e202006125. (2020), DOI:10.1083/jcb.202006125
・Combined Approach to Engineer a Highly Active Mutant of Processive Chitinase Hydrolyzing Crystalline Chitin
A. Visootsat, A. Nakamura, T.W. Wang, and *R. Iino, ACS Omega , 5, 26807–26816 (2020), DOI:10.1021/acsomega.0c03911
・Synergetic roles of Formyl Peptide Receptor 1 oligomerization in ligand-induced signal transduction
T. Nishiguchi, H. Yoshimura, R. S. Kasai, T. K. Fujiwara, *T. Ozawa, ACS Chem. Biol. , 15, 2577-2587 (2020), DOI:10.1021/acschembio.0c00631
・Single Cell Array Enclosed with a Photodegradable Hydrogel in Microwells for Image-Based Cell Classification and Selective Photorelease of Cells
S. Yamaguchi, R. Takagi, T. Hosogane, Y. Ohashi, Y. Sakai, S. Sakakihara, R. Iino, K. V. Tabata, H. Noji, and A. Okamoto, ACS Appl. Bio Mater. , 3, 5887–5895 (2020), DOI:10.1021/acsabm.0c00583
・Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motors:Application to Processive Chitinase
*K. Okazaki, A. Nakamura, R. Iino, J. Phys. Chem. , 124, 6475–6487 (2020), DOI:10.1021/acs.jpcb.0c02698
・Crystalline chitin hydrolase is a burnt-bridge Brownian moto
A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai , J. Ando, R. Iino, Biophysics and Physicobiology,17, 51-58 (2020), DOI:10.2142/biophysico.BSJ-2020004
・Small stepping motion of processive dynein revealed by load-free high-speed single-particle tracking
J. Ando, T. Shima, R. Kanazawa, R. Shimo-Kon, A. Nakamura, M. Yamamoto, T. Kon, *R. Iino, Sci. Rep. , 10 ,1080(2020), DOI:10.1038/s41598-020-58070-y
・Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens
A. Visootsat, A. Nakamura, P. Vignon, H. Watanabe, T. Uchihashi, *R. Iino, J. Biol. Chem., 295, 1915-1925 (2020), DOI:10.1021/acsphotonics.9b00953
・Multicolor High-Speed Tracking of Single Biomolecules with Silver, Gold, and Silver–Gold Alloy Nanoparticles
*J. Ando, A. Nakamura, M. Yamamoto, C. Song, K. Murata, *R. Iino, ACS Photonics , 6, 2870-2883(2019), DOI:10.1021/acsphotonics.9b00953
・Single-molecule analysis reveals rotational substeps and chemo-mechanical coupling scheme of Enterococcus hirae V1-ATPase
T. Iida, Y. Minagawa, H. Ueno, F. Kawai, T. Murata, *R. Iino, J. Biol. Chem. , 294 ,17017-17030 (2019), DOI:10.1074/jbc.RA119.008947
・Accurate high-throughput screening based on digital protein synthesis in a massively parallel femtoliter droplet array
*Y. Zhang, Y. Minagawa, H. Kizoe, K. Miyazaki, R. Iino, H. Ueno, K. Tabata, Y. Shimane, *H. Noji, Sci. Adv.,5, eaav8185 (2019), DOI: 10.1126/sciadv.aav8185
・High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies
T. Umakoshi, S. Fukuda, R. Iino, T. Uchihashi, *T. Ando, Biochimica et Biophysica Acta (BBA) - General Subjects 1864(2019), DOI: 10.1016/j.bbagen.2019.03.011
・Single-nanoparticle tracking with angstrom localization precision and microsecond time resolution
J. Ando, A. Nakamura, A. Visootsat, M. Yamamoto, C. Song, K. Murata, *R. Iino, Biophys. J., 115,2413-2427 (2018), DOI:10.1016/j.bpj.2018.11.016
・Simultaneous Observation of Kinesin-Driven Microtubule Motility and Binding of Adenosine Triphosphate Using Linear Zero-Mode Waveguides
K. Fujimoto, Y. Morita, R. Iino, M. Tomishige, H. Shintaku, H. Kotera, *R. Yokokawa, ACS Nano , 12,11975-11985(2018),DOI:10.1021/acsnano.8b03803
・Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopy
J. Tsunoda, C. Song, F. L. Imai, J. Takagi, H. Ueno, T. Murata, R. Iino, *K. Murata, Sci. Rep., 8, 15632 (2018), DOI: 10.1038/s41598-018-33977-9
・Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin
*A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai, *R. Iino, Nat. Commun., 9, 3814(2018), DOI:10.1038/s41467-018-06362-3
・Plasmid-Based One-Pot Saturation Mutagenesis and Robot-Based Automated Screening for Protein Engineering
F. Kawai, A. Nakamura, A. Visootsat, *R. Iino, ACS Omega, 3, 7715-7726 (2018), DOI: 10.1021/acsomega.8b00663
書籍/総説・解説
・多色・高速1分子イメージング:金銀ナノ粒子による多色・高速生体1分子イメージング
*安藤潤, 中村彰彦, 山本真由子, ソンチホン, 村田和義, 飯野亮太, 光学 , 49, 249 (2020),
・セラチア菌由来キチン加水分解酵素の運動機構
*中村彰彦, 岡崎圭一, 古田忠臣, 櫻井実, 飯野亮太, 応用糖質科学 , 6, 132-136 (2021),
・銀, 金, 銀金合金ナノ粒子の光散乱を利用したマルチカラー生体1分子追跡
*安藤潤, *飯野亮太, フォトニクスニュース , 10, 89-95 (2020),
・生きものが機械でもいいじゃない
飯野亮太, 生物物理 , 61, 77 (2021), DOI:10.2142/biophys.61.077
・Crystalline chitin hydrolase is a burnt-bridge Brownian motor
A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai, J. Ando, R. Iino,
Biophysics and Physicobiology , 17, 51-58 (2020), DOI:10.2142/biophysico.BSJ-2020004
・Introduction: Molecular Motors
*R. Iino, *K. Kinbara, *Z. Bryant, Chem. Rev., 120, 1-4 (2020), DOI: 10.1021/acs.chemrev.9b00819
・Defining raft domains in the plasma membrane
*A. Kusumi, T. K. Fujiwara, T. A. Tsunoyama, R. S. Kasai, A. A. Liu, K. M. Hirosawa, M. Kinoshita, N. Matsumori, N. Komura, H. Ando, K. G. N. Suzuki, Traffic, 21, 106-137 (2020), DOI: 10.1111/tra.12718
・Visualization of Functional Structure and Kinetic Dynamics of Cellulases
*A. Nakamura, R. Iino,
Adv. Exp. Med. Biol., 1104 , 201-217 (2018), DOI: 10.1007/978-981-13-2158-0_10
・多色・高速1分子イメージング:金銀ナノ粒子による多色・高速生体1分子イメージング
*安藤潤, 中村彰彦, 山本真由子, ソンチホン, 村田和義, 飯野亮太, 光学 , 49, 249 (2020),
・セラチア菌由来キチン加水分解酵素の運動機構
*中村彰彦, 岡崎圭一, 古田忠臣, 櫻井実, 飯野亮太, 応用糖質科学 , 6, 132-136 (2021),
・銀, 金, 銀金合金ナノ粒子の光散乱を利用したマルチカラー生体1分子追跡
*安藤潤, *飯野亮太, フォトニクスニュース , 10, 89-95 (2020),
・生きものが機械でもいいじゃない
飯野亮太, 生物物理 , 61, 77 (2021), DOI:10.2142/biophys.61.077
・Crystalline chitin hydrolase is a burnt-bridge Brownian motor
A. Nakamura, K. Okazaki, T. Furuta, M. Sakurai, J. Ando, R. Iino,
Biophysics and Physicobiology , 17, 51-58 (2020), DOI:10.2142/biophysico.BSJ-2020004
・Introduction: Molecular Motors
*R. Iino, *K. Kinbara, *Z. Bryant, Chem. Rev., 120, 1-4 (2020), DOI: 10.1021/acs.chemrev.9b00819
・Defining raft domains in the plasma membrane
*A. Kusumi, T. K. Fujiwara, T. A. Tsunoyama, R. S. Kasai, A. A. Liu, K. M. Hirosawa, M. Kinoshita, N. Matsumori, N. Komura, H. Ando, K. G. N. Suzuki, Traffic, 21, 106-137 (2020), DOI: 10.1111/tra.12718
・Visualization of Functional Structure and Kinetic Dynamics of Cellulases
*A. Nakamura, R. Iino,
Adv. Exp. Med. Biol., 1104 , 201-217 (2018), DOI: 10.1007/978-981-13-2158-0_10